Integration benchmarks¶
Datasets¶
- UK Biobank
- Targets:
- Primary: MDD diagnosis (binary; Howard et al. GWAS), PHQ-9 depression severity (continuous)
- Secondary cognitive: Fluid intelligence, reaction time, cognitive composite
- Stratifications: Early-onset MDD (age < 21), late-onset MDD (age ≥ 21)
Splits¶
- GroupKFold by site
- Deterministic seeds with versioned
splits.json
Metrics & reporting¶
- AUC, PR-AUC, Brier score
- Calibration curves + subgroup reporting with confidence intervals