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md. I’ll also keep carrying the specific repository + license notice on every walkthrough page so each doc makes its licensing context explicit.

Dataset Card Template

Metadata

  • Dataset name: <UKB/ABCD/etc>
  • Source / accession: <URL or data agreement>
  • License / DUA: <e.g., UKB Research Analysis Tool terms>
  • Primary contact: <PI / analyst>
  • Related YAML: kb/datasets/<id>.yaml

Access & Storage

  • Paths to raw data (e.g., /secure/ukb/raw), processed derivatives, and sync locations.
  • Encryption / PHI considerations; who has access.

Hugging Face / Shared Mirrors

  • Dataset repo + subset names, record counts, checksum or snapshot tags.
  • Notes on sync cadence between mirrors and secured copies.

Cohort Summary

Split N subjects Notes
Train <N> <filters>
Val <N>
Test <N>

Add stratification notes (sex balance, age range, sites).

Modality-Specific Schema

  • Column lists per modality (genes, ROIs, clinical tables) with links back to docs/data/schemas.md.
  • Required covariates + units.

Overlap & Pairing Logic

  • How subjects overlap with other modalities (e.g., gene × sMRI intersection).
  • Inclusion/exclusion rules, QC flags (motion, missing genes, etc.).

Genomics / Base-Pair Stats

  • Total base pairs, mean/median sequence length, tokenizer context alignment details.

Preprocessing Pipelines

  • Imaging: software versions, atlases, smoothing, censoring thresholds.
  • Genetics: variant calling, phasing, annotation, gene list definition.
  • Clinical: diagnosis coding, questionnaire scoring.

Available Features & Covariates

  • Feature tables (e.g., FreeSurfer ROIs, FC z-maps, gene embeddings).
  • Covariates recommended for residualization (age, sex, site, motion, PCs, SES).
  • Missingness patterns and imputation strategy if required.

QC & Harmonization

  • Thresholds (FD < 0.3 mm, min TR length).
  • Site/scanner harmonization (e.g., ComBat) or reasons for not applying.
  • Logs / reports location.

Notes & Risks

  • Any data use restrictions (no redistribution, publication review).
  • Confounds or biases to monitor (ancestry imbalance, site skew).
  • Planned updates or reprocessing tasks.

References

  • Link to cohort publications / documentation.
  • Internal tickets or notebooks for preprocessing runs.

Linked Walkthroughs & External Repos

  • Walkthrough pages that describe preprocessing.
  • external_repos/* scripts or configs that produced the released tensors (commit/tag + entrypoint).